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Yes Shadow Clones can do jutsus on their own terms. When Naruto creates them, he pores a certain amount of chakra into each of them, and as long as the clones have chakra, are not mortality wounded, or if Naruto himself is knocked out, the clones can as they please, but given that they have the same mentality as the caster, Naruto, they will automatically go along with his plan.

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